Literature summary for 1.3.7.8 extracted from

Song, B.; Ward, B.B.
Genetic diversity of benzoyl coenzyme a reductase genes detected in denitrifying isolates and estuarine sediment communities (2005), Appl. Environ. Microbiol., 71, 2036-2045.

Search for more literature for 1.3.7.8

Application

Application	Comment	Organism
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Acidovorax sp.
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Magnetospirillum magnetotacticum
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Thauera selenatis
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Thauera aromatica
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Aromatoleum evansii
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Aromatoleum tolulyticum
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Thauera chlorobenzoica
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Aromatoleum toluvorans
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Aromatoleum toluclasticum
analysis	the detection of benzoyl-CoA reductase genes from bacterial pure cultures and environmental samples can be used to determine the genetic capability for anaerobic degradation of aromatic compounds and to monitor the anaerobic degradation of many different aromatic compounds in the environment. Sequence divergence of benzoyl-CoA reductase genes could be used to identify and distinguish among different bacterial populations degrading aromatic compounds in various environments. Microarray or real-time PCR amplification with specific primers for different types of benzoyl-CoA reductase genes could be applicable in environmental studies to determine which types are dominant and activated in particular environmental conditions and to evaluate the population response to variation in environmental factors. The first step in this approach is described	Rhodopseudomonas palustris

Natural Substrates/ Products (Substrates)

Natural Substrates	Organism	Comment (Nat. Sub.)	Natural Products	Comment (Nat. Pro.)	Rev.	Reac.
benzoyl-CoA + reduced acceptor + ATP + H2O	Acidovorax sp.	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Magnetospirillum magnetotacticum	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Thauera selenatis	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Thauera aromatica	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Aromatoleum evansii	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Aromatoleum tolulyticum	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Thauera chlorobenzoica	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Aromatoleum toluvorans	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Aromatoleum toluclasticum	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Rhodopseudomonas palustris	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Thauera selenatis 3CB-1	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Acidovorax sp. 2FB7	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	Thauera chlorobenzoica 3CB-1	central enzyme in the anaerobic degradation of organic carbon	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?

Organism

Organism	UniProt	Comment	Textmining
Acidovorax sp.	-	-	-
Acidovorax sp. 2FB7	-	-	-
Aromatoleum evansii	Q8VUG0	subunit of benzoyl-CoA reductase, gene name: bzdQ	-
Aromatoleum evansii	Q8VUG1	subunit of benzoyl-CoA reductase, gene name: bzdP	-
Aromatoleum evansii	Q8VUG2	subunit of benzoyl-CoA reductase, gene name: bzdO	-
Aromatoleum evansii	Q8VUG3	subunit of benzoyl-CoA reductase, gene name: bzdN	-
Aromatoleum toluclasticum	-	-	-
Aromatoleum tolulyticum	Q4Z8X5	putative benzoyl-CoA reductase, gene name: bzdQ	-
Aromatoleum toluvorans	-	-	-
Magnetospirillum magnetotacticum	-	-	-
Rhodopseudomonas palustris	O07460	subunit of benzoyl-CoA reductase, gene name badD	-
Rhodopseudomonas palustris	O07461	subunit of benzoyl-CoA reductase, gene name badE	-
Rhodopseudomonas palustris	O07462	subunit of benzoyl-CoA reductase, gene name badF	-
Rhodopseudomonas palustris	O07463	subunit of benzoyl-CoA reductase, gene name badG	-
Thauera aromatica	O87876	A-subunit of benzoyl-CoA reductase; all the Thauera strains and the isolates from the genera Acidovorax, Bradyrhizobium, Paracoccus, Ensifer, and Pseudomonas have bcr-type benzoyl-CoA reductases with amino acid sequence similarities of more than 97%	-
Thauera chlorobenzoica	-	all the Thauera strains and the isolates from the genera Acidovorax, Bradyrhizobium, Paracoccus, Ensifer, and Pseudomonas have bcr-type benzoyl-CoA reductases with amino acid sequence similarities of more than 97%	-
Thauera chlorobenzoica 3CB-1	-	all the Thauera strains and the isolates from the genera Acidovorax, Bradyrhizobium, Paracoccus, Ensifer, and Pseudomonas have bcr-type benzoyl-CoA reductases with amino acid sequence similarities of more than 97%	-
Thauera selenatis	-	all the Thauera strains and the isolates from the genera Acidovorax, Bradyrhizobium, Paracoccus, Ensifer, and Pseudomonas have bcr-type benzoyl-CoA reductases with amino acid sequence similarities of more than 97%	-
Thauera selenatis 3CB-1	-	all the Thauera strains and the isolates from the genera Acidovorax, Bradyrhizobium, Paracoccus, Ensifer, and Pseudomonas have bcr-type benzoyl-CoA reductases with amino acid sequence similarities of more than 97%	-

Substrates and Products (Substrate)

Substrates	Comment Substrates	Organism	Products	Comment (Products)	Rev.	Reac.
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Acidovorax sp.	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Magnetospirillum magnetotacticum	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Thauera selenatis	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Thauera aromatica	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Aromatoleum evansii	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Aromatoleum tolulyticum	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Thauera chlorobenzoica	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Aromatoleum toluvorans	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Aromatoleum toluclasticum	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Rhodopseudomonas palustris	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Thauera selenatis 3CB-1	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Acidovorax sp. 2FB7	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?
benzoyl-CoA + reduced acceptor + ATP + H2O	central enzyme in the anaerobic degradation of organic carbon	Thauera chlorobenzoica 3CB-1	cyclohexa-1,5-diene-1-carbonyl-CoA + acceptor + ADP + phosphate	-	?

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Release 2023.1 (January 2023)