Activating Compound | Comment | Organism | Structure |
---|---|---|---|
homocitrate | plays role in electron transfer at the [4Fe-4S] cluster to the MoFe-cofactor of the MoFe protein, can be substituted by erythro-fluorohomocitrate but not by threo-fluorohomocitrate | Clostridium pasteurianum | |
homocitrate | plays role in electron transfer at the [4Fe-4S] cluster to the MoFe-cofactor of the MoFe protein, can be substituted by erythro-fluorohomocitrate but not by threo-fluorohomocitrate | Azotobacter vinelandii | |
homocitrate | plays role in electron transfer at the [4Fe-4S] cluster to the MoFe-cofactor of the MoFe protein, can be substituted by erythro-fluorohomocitrate but not by threo-fluorohomocitrate | Azotobacter chroococcum |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
Iron | contains [4Fe4S] cluster | Clostridium pasteurianum | |
Iron | contains [4Fe4S] cluster | Azotobacter vinelandii | |
Iron | contains [4Fe4S] cluster | Azotobacter chroococcum | |
Mg2+ | Mg2+ required for MgATP complex | Clostridium pasteurianum | |
Mg2+ | Mg2+ required for MgATP complex | Azotobacter vinelandii | |
Mg2+ | Mg2+ required for MgATP complex | Azotobacter chroococcum | |
Molybdenum | MoFe-cofactor contains 2 clusters of composition [4Fe-3S] and [1Mo-3Fe-3S] that are brigded by 3 nonprotein ligands | Clostridium pasteurianum | |
Molybdenum | MoFe-cofactor contains 2 clusters of composition [4Fe-3S] and [1Mo-3Fe-3S] that are brigded by 3 nonprotein ligands | Azotobacter vinelandii | |
Molybdenum | MoFe-cofactor contains 2 clusters of composition [4Fe-3S] and [1Mo-3Fe-3S] that are brigded by 3 nonprotein ligands | Azotobacter chroococcum | |
additional information | structure and organization of metal clusters | Clostridium pasteurianum | |
additional information | structure and organization of metal clusters | Azotobacter vinelandii | |
additional information | structure and organization of metal clusters | Azotobacter chroococcum | |
Vanadium | characterization of the metal clusters in the nitrogenase vanadium-iron protein | Clostridium pasteurianum | |
Vanadium | characterization of the metal clusters in the nitrogenase vanadium-iron protein | Azotobacter vinelandii | |
Vanadium | characterization of the metal clusters in the nitrogenase vanadium-iron protein | Azotobacter chroococcum |
Molecular Weight [Da] | Molecular Weight Maximum [Da] | Comment | Organism |
---|---|---|---|
60000 | - |
Fe protein | Clostridium pasteurianum |
60000 | - |
Fe protein | Azotobacter vinelandii |
60000 | - |
Fe protein | Azotobacter chroococcum |
60000 | - |
about | Clostridium pasteurianum |
60000 | - |
about | Azotobacter vinelandii |
60000 | - |
about | Azotobacter chroococcum |
Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | Clostridium pasteurianum | biological N2 fixation | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | Azotobacter vinelandii | biological N2 fixation | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | Azotobacter chroococcum | biological N2 fixation | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Azotobacter chroococcum | - |
nitrogen fixation complex is encoded on nif gene cluster | - |
Azotobacter vinelandii | - |
nitrogen fixation complex is encoded on nif gene cluster | - |
Azotobacter vinelandii | - |
2 forms of VFe protein | - |
Clostridium pasteurianum | - |
nitrogen fixation complex is encoded on nif gene cluster | - |
Reaction | Comment | Organism | Reaction ID |
---|---|---|---|
4 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O = 4 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | enzyme is composed of 2 metalloproteins: component I MoFe protein and component II Fe protein | Clostridium pasteurianum | |
4 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O = 4 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | enzyme is composed of 2 metalloproteins: component I MoFe protein and component II Fe protein | Azotobacter vinelandii | |
4 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O = 4 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | enzyme is composed of 2 metalloproteins: component I MoFe protein and component II Fe protein | Azotobacter chroococcum |
Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|
2 reduced ferredoxin + 2 H+ + acetylene + 2 ATP + 2 H2O | - |
Clostridium pasteurianum | 2 oxidized ferredoxin + ethylene + 2 ADP + 2 phosphate | - |
? | |
2 reduced ferredoxin + 2 H+ + acetylene + 2 ATP + 2 H2O | - |
Azotobacter vinelandii | 2 oxidized ferredoxin + ethylene + 2 ADP + 2 phosphate | - |
? | |
2 reduced ferredoxin + 2 H+ + acetylene + 2 ATP + 2 H2O | - |
Azotobacter chroococcum | 2 oxidized ferredoxin + ethylene + 2 ADP + 2 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | MgATP-dependent | Clostridium pasteurianum | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | MgATP-dependent | Azotobacter vinelandii | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | MgATP-dependent | Azotobacter chroococcum | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | biological N2 fixation | Clostridium pasteurianum | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | biological N2 fixation | Azotobacter vinelandii | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
8 reduced ferredoxin + 8 H+ + N2 + 16 ATP + 16 H2O | biological N2 fixation | Azotobacter chroococcum | 8 oxidized ferredoxin + H2 + 2 NH3 + 16 ADP + 16 phosphate | - |
? | |
reduced ferredoxin + H+ + CN- + ATP | - |
Clostridium pasteurianum | oxidized ferredoxin + CH4 + NH3 + ADP + phosphate | - |
? | |
reduced ferredoxin + H+ + CN- + ATP | - |
Azotobacter vinelandii | oxidized ferredoxin + CH4 + NH3 + ADP + phosphate | - |
? | |
reduced ferredoxin + H+ + CN- + ATP | - |
Azotobacter chroococcum | oxidized ferredoxin + CH4 + NH3 + ADP + phosphate | - |
? | |
reduced ferredoxin + H+ + N3- + ATP | - |
Clostridium pasteurianum | oxidized ferredoxin + NH3 + N2 + ADP + phosphate | - |
? | |
reduced ferredoxin + H+ + N3- + ATP | - |
Azotobacter vinelandii | oxidized ferredoxin + NH3 + N2 + ADP + phosphate | - |
? | |
reduced ferredoxin + H+ + N3- + ATP | - |
Azotobacter chroococcum | oxidized ferredoxin + NH3 + N2 + ADP + phosphate | - |
? |
Cofactor | Comment | Organism | Structure |
---|---|---|---|
additional information | structure models of Fe protein, MoFe protein, and MoFe-cofactor, and their metal centers, e.g. the [4Fe-4S] cluster based on crystallographic data, substrate binding and electron transfer | Clostridium pasteurianum | |
additional information | structure models of Fe protein, MoFe protein, and MoFe-cofactor, and their metal centers, e.g. the [4Fe-4S] cluster based on crystallographic data, substrate binding and electron transfer | Azotobacter vinelandii | |
additional information | structure models of Fe protein, MoFe protein, and MoFe-cofactor, and their metal centers, e.g. the [4Fe-4S] cluster based on crystallographic data, substrate binding and electron transfer | Azotobacter chroococcum |