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a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3'CCA end + 3 diphosphate
a tRNA precursor + CTP
a tRNA with a 3' cytidine end + diphosphate
a tRNA with a 3' CC end + ATP
a tRNA with a 3' CCA end + diphosphate
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' cytidine + CTP
a tRNA with a 3' CC end + diphosphate
a tRNA(Ala) precursor + 2 CTP + ATP
a tRNA(Ala) with a 3' CCA end + 3 diphosphate
synthesizes poly(C) when incubated with CTP alone, but switches to synthesize CCA when incubated with both CTP and ATP. The enzyme also exhibits a processing activity that removes nucleotides in the 3' to 5' direction to as far as position 74
-
-
?
armless tRNA(Arg) precursor + 2 CTP
armless tRNA(Arg) with a 3' CC end + 2 diphosphate
armless tRNA(Arg) precursor + 2 CTP + ATP
armless tRNA(Arg) with a 3' CCA end + 3 diphosphate
armless tRNA(Ile) precursor + 2 CTP
armless tRNA(Ile) with a 3' CC end + 2 diphosphate
armless tRNA(Ile) precursor + 2 CTP + ATP
armless tRNA(Ile) with a 3' CCA end + 3 diphosphate
ATP + tRNA-C-C
tRNA-C-C-A + diphosphate
CTP + tRNA-C
tRNA-C-C + diphosphate
-
-
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
tRNA(Leu) precursor + 2 CTP + ATP
tRNA(Leu) with a 3'CCA end + 3 diphosphate
-
-
-
?
tRNA(Phe) precursor + 2 CTP
tRNA(Phe) with a 3' CC end + 2 diphosphate
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
tRNA(Ser) precursor + 2 CTP + ATP
tRNA(Ser) with a 3'CCA end + 3 diphosphate
-
-
-
?
tRNAAsp with a 3' CC end + ATP
tRNAAsp with a 3' CCA end + diphosphate
tRNAAsp with a 3' cytidine + CTP
tRNAAsp with a 3' CC end + diphosphate
tRNACys + 2 CTP + ATP
tRNACys with 3'-CCA end + 3 diphosphate
-
insertional editing of substrate is not required for addition of the CCA sequence by CCase
-
-
?
tRNAHis+G-1 + 2 CTP + ATP
tRNAHis+G-1 with a 3' CCA end + 3 diphosphate
tRNAHisDELTAG-1 + 2 CTP + ATP
tRNAHisDELTAG-1 with a 3' CCA end + 3 diphosphate
tRNAX1 + ATP + 2 CTP
tRNAXCCA + 3 diphosphate
yeast tRNAPhe + 2 CTP + ATP
yeast tRNAPhe with 3'-CCA end + 3 diphosphate
additional information
?
-
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
substrate is synthetic DNA templates based on the sequence of Escherichia coli tRNAVal. Overall reaction
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
the 30-region of RNA is proofread, after two nucleotide additions, in the closed, active form of the complex at the AMP incorporation stage. This proofreading is a prerequisite for the maintenance of fidelity for complete CCA synthesis
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
tRNA does not rotate or translocate during C74 addition. A single flexible beta-turn orchestrates consecutive addition of all three nucleotides without significant movement of the tRNA on the enzyme surface
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
substrate is synthetic DNA templates based on the sequence of Escherichia coli tRNAVal. Overall reaction, class II CCA-adding enzymes also perform the reverse reaction, mechanism, overview. The enzyme catalyzes diphosphorolysis slowly relative to the forward nucleotide addition and that it exhibits weak binding affinity to diphosphate relative to NTP
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
substrate is synthetic DNA templates based on the sequence of Escherichia coli tRNAVal. Overall reaction, class II CCA-adding enzymes also perform the reverse reaction, mechanism, overview. The enzyme catalyzes diphosphorolysis slowly relative to the forward nucleotide addition and that it exhibits weak binding affinity to diphosphate relative to NTP
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
overall reaction
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
one catalytic center is responsible for addition of both CTP and ATP. As the single active site catalyzes addition of each nucleotide, the growing 3'-end of the tRNA would progressively refold to create a binding pocket for addition of the next nucleotide
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3'CCA end + 3 diphosphate
-
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3'CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + CTP
a tRNA with a 3' cytidine end + diphosphate
C74 addition
-
-
?
a tRNA precursor + CTP
a tRNA with a 3' cytidine end + diphosphate
-
-
-
?
a tRNA precursor + CTP
a tRNA with a 3' cytidine end + diphosphate
one catalytic center is responsible for addition of both CTP and ATP. As the single active site catalyzes addition of each nucleotide, the growing 3'-end of the tRNA would progressively refold to create a binding pocket for addition of the next nucleotide
-
-
?
a tRNA with a 3' CC end + ATP
a tRNA with a 3' CCA end + diphosphate
-
-
-
?
a tRNA with a 3' CC end + ATP
a tRNA with a 3' CCA end + diphosphate
A76 addition
-
-
?
a tRNA with a 3' CC end + ATP
a tRNA with a 3' CCA end + diphosphate
-
-
-
?
a tRNA with a 3' CC end + ATP
a tRNA with a 3' CCA end + diphosphate
one catalytic center is responsible for addition of both CTP and ATP. As the single active site catalyzes addition of each nucleotide, the growing 3'-end of the tRNA would progressively refold to create a binding pocket for addition of the next nucleotide
-
-
?
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
-
-
-
r
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
substrate is synthetic DNA templates based on the sequence of Escherichia coli tRNAVal. Overall reaction, class II CCA-adding enzymes also perform the reverse reaction, mechanism, overview. The enzyme catalyzes diphosphorolysis slowly relative to the forward nucleotide addition and that it exhibits weak binding affinity to diphosphate relative to NTP
-
-
r
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
-
-
-
r
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
substrate is synthetic DNA templates based on the sequence of Escherichia coli tRNAVal. Overall reaction, class II CCA-adding enzymes also perform the reverse reaction, mechanism, overview. The enzyme catalyzes diphosphorolysis slowly relative to the forward nucleotide addition and that it exhibits weak binding affinity to diphosphate relative to NTP
-
-
r
a tRNA with a 3' cytidine + CTP
a tRNA with a 3' CC end + diphosphate
-
-
-
?
a tRNA with a 3' cytidine + CTP
a tRNA with a 3' CC end + diphosphate
C75 addition
-
-
?
a tRNA with a 3' cytidine + CTP
a tRNA with a 3' CC end + diphosphate
-
-
-
?
a tRNA with a 3' cytidine + CTP
a tRNA with a 3' CC end + diphosphate
one catalytic center is responsible for addition of both CTP and ATP. As the single active site catalyzes addition of each nucleotide, the growing 3'-end of the tRNA would progressively refold to create a binding pocket for addition of the next nucleotide
-
-
?
armless tRNA(Arg) precursor + 2 CTP
armless tRNA(Arg) with a 3' CC end + 2 diphosphate
poor substrate for wild-type
-
-
?
armless tRNA(Arg) precursor + 2 CTP
armless tRNA(Arg) with a 3' CC end + 2 diphosphate
-
-
-
-
?
armless tRNA(Arg) precursor + 2 CTP + ATP
armless tRNA(Arg) with a 3' CCA end + 3 diphosphate
poor substrate for wild-type
-
-
?
armless tRNA(Arg) precursor + 2 CTP + ATP
armless tRNA(Arg) with a 3' CCA end + 3 diphosphate
-
-
-
-
?
armless tRNA(Ile) precursor + 2 CTP
armless tRNA(Ile) with a 3' CC end + 2 diphosphate
poor substrate for wild-type
-
-
?
armless tRNA(Ile) precursor + 2 CTP
armless tRNA(Ile) with a 3' CC end + 2 diphosphate
-
-
-
-
?
armless tRNA(Ile) precursor + 2 CTP + ATP
armless tRNA(Ile) with a 3' CCA end + 3 diphosphate
poor substrate for wild-type
-
-
?
armless tRNA(Ile) precursor + 2 CTP + ATP
armless tRNA(Ile) with a 3' CCA end + 3 diphosphate
-
-
-
-
?
ATP + tRNA-C-C
tRNA-C-C-A + diphosphate
-
-
-
?
ATP + tRNA-C-C
tRNA-C-C-A + diphosphate
-
-
-
-
?
ATP + tRNA-C-C
tRNA-C-C-A + diphosphate
-
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
the specific recognition of deaminated bases by polymerase PolB1 may represent an initial step in their repair while polymerase PolY1 may be involved in damage tolerance at the replication fork. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
specifically recognizes the presence of the deaminated bases hypoxanthine and uracil in the template by stalling DNA polymerization 3-4 bases upstream of these lesions and strongly associates with oligonucleotides containing them. PolB1 also stops at 8-oxoguanine and is unable to bypass an abasic site in the template. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
the specific recognition of deaminated bases by polymerase PolB1 may represent an initial step in their repair while polymerase PolY1 may be involved in damage tolerance at the replication fork. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
specifically recognizes the presence of the deaminated bases hypoxanthine and uracil in the template by stalling DNA polymerization 3-4 bases upstream of these lesions and strongly associates with oligonucleotides containing them. PolB1 also stops at 8-oxoguanine and is unable to bypass an abasic site in the template. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
tRNA(Phe) precursor + 2 CTP
tRNA(Phe) with a 3' CC end + 2 diphosphate
-
-
-
?
tRNA(Phe) precursor + 2 CTP
tRNA(Phe) with a 3' CC end + 2 diphosphate
-
-
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
-
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
substrate is tRNA(Phe) precursor from Saccharomyces cerevisiae
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
-
-
-
-
?
tRNA(Phe) precursor + 2 CTP + ATP
tRNA(Phe) with a 3' CCA end + 3 diphosphate
the 48 kDa monomer forms a stable salt-resistant dimer in solution. Further dimerization of the dimeric enzyme to form a tetramer is induced by the binding of two tRNA molecules. The formation of a tetramer with only two bound tRNA molecules leads to the suggestion that one pair of active sites may be specific for adding two C bases, which results in scrunching of the primer strand. An adjacent second pair of active sites may be specific for adding A after addition of two C bases which makes the 30 terminus long enough to reach the second pair of active sites
-
-
?
tRNAAsp with a 3' CC end + ATP
tRNAAsp with a 3' CCA end + diphosphate
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAAsp with a 3' CC end + ATP
tRNAAsp with a 3' CCA end + diphosphate
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAAsp with a 3' cytidine + CTP
tRNAAsp with a 3' CC end + diphosphate
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAAsp with a 3' cytidine + CTP
tRNAAsp with a 3' CC end + diphosphate
-
usage of tRNAAsp of Bacillus subtilis as substrate, and 5'-labeled tRNA-C and 3'-labeled tRNA-CC alkylated by ethylnitrosourea
-
-
?
tRNAHis+G-1 + 2 CTP + ATP
tRNAHis+G-1 with a 3' CCA end + 3 diphosphate
-
-
-
?
tRNAHis+G-1 + 2 CTP + ATP
tRNAHis+G-1 with a 3' CCA end + 3 diphosphate
-
-
-
?
tRNAHisDELTAG-1 + 2 CTP + ATP
tRNAHisDELTAG-1 with a 3' CCA end + 3 diphosphate
-
-
-
?
tRNAHisDELTAG-1 + 2 CTP + ATP
tRNAHisDELTAG-1 with a 3' CCA end + 3 diphosphate
-
-
-
?
tRNAX1 + ATP + 2 CTP
tRNAXCCA + 3 diphosphate
-
only one protein is responsible for both AMP and CMP incorporation
-
-
r
tRNAX1 + ATP + 2 CTP
tRNAXCCA + 3 diphosphate
-
only one protein is responsible for both AMP and CMP incorporation
-
-
r
yeast tRNAPhe + 2 CTP + ATP
yeast tRNAPhe with 3'-CCA end + 3 diphosphate
-
preparation of substrate lacking the CCA-terminus or ending with a partial CCA-end
-
-
?
yeast tRNAPhe + 2 CTP + ATP
yeast tRNAPhe with 3'-CCA end + 3 diphosphate
-
preparation of substrate lacking the CCA-terminus or ending with a partial CCA-end
-
-
?
yeast tRNAPhe + 2 CTP + ATP
yeast tRNAPhe with 3'-CCA end + 3 diphosphate
preparation of substrate lacking the CCA-terminus or ending with a partial CCA-end
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
in Aquifex aeolicus, 3'-terminal CCA (CCA-3' at positions 74-76) of tRNA is synthesized by CC-adding and A-adding enzymes collaboratively. CC addition onto tRNA is catalyzed by poly A polymerase. After C74 addition in an enclosed active pocket and diphosphate release, the tRNA translocates and rotates relative to the enzyme, and C75 addition occurs in the same active pocket as C74 addition. At both the C74-adding and C75-adding stages, CTP is selected by Watson-Crick-like hydrogen bonds between the cytosine of CTP and conserved Asp and Arg residues in the pocket. After C74C75 addition and diphosphate release, the tRNA translocates further and drops off the enzyme
-
-
?
additional information
?
-
-
in Aquifex aeolicus, 3'-terminal CCA (CCA-3' at positions 74-76) of tRNA is synthesized by CC-adding and A-adding enzymes collaboratively. CC addition onto tRNA is catalyzed by poly A polymerase. After C74 addition in an enclosed active pocket and diphosphate release, the tRNA translocates and rotates relative to the enzyme, and C75 addition occurs in the same active pocket as C74 addition. At both the C74-adding and C75-adding stages, CTP is selected by Watson-Crick-like hydrogen bonds between the cytosine of CTP and conserved Asp and Arg residues in the pocket. After C74C75 addition and diphosphate release, the tRNA translocates further and drops off the enzyme
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 1 enzymes recognize and select the correct nucleotides not as pure protein-based enzymes, but as ribonucleoproteins, where the tRNA part is not just a substrate molecule (primer), but is an active part of the nucleotide binding pocket
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
class I CCA enzymes do not catalyze diphosphorolysis in contrast to class II CCA enzymes, overview
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-
?
additional information
?
-
tRNA minihelices, which contain only the acceptor stem and TPsiC stem-loop, are also efficiently subjected to CCACCA addition when they have guanosines at the first and second positions as well as a destabilized acceptor stem by virtue of mismatches and G-U wobbles
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
both isoforms Cca1 and Cca2 accept the complete sets of cytosolic and mitochondrial tRNAs at the individual developmental stages. Isoform Cca2 shows efficient binding to the substrates with a Kd of 2.3 microM and 1.7 microM for the in vitro transcript and the in vivo tRNA preparation, respectively. Isoform Cca1 shows almost no binding at any protein concentration
-
-
-
additional information
?
-
both isoforms Cca1 and Cca2 accept the complete sets of cytosolic and mitochondrial tRNAs at the individual developmental stages. Isoform Cca2 shows efficient binding to the substrates with a Kd of 2.3 microM and 1.7 microM for the in vitro transcript and the in vivo tRNA preparation, respectively. Isoform Cca1 shows almost no binding at any protein concentration
-
-
-
additional information
?
-
-
the CCA-adding enzymes can use three different substrates: tRNAs lacking one, i.e. tRNA-CC, two, i.e. tRNA-C, or all three 3'-terminal nucleotides, tRNA. The CCA-adding enzyme recognizes primarily the top half tRNA minihelix
-
-
?
additional information
?
-
the HD domain of the enzyme also exhibits 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and Ni2+-dependent phosphatase activities, overview
-
-
?
additional information
?
-
-
the HD domain of the enzyme also exhibits 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and Ni2+-dependent phosphatase activities, overview
-
-
?
additional information
?
-
-
the tRNA substrate must remain fixed on the enzyme surface during CA addition. Both CTP addition to tRNA-C and ATP addition to tRNA-CC are dramatically inhibited by alkylation of the same tRNA phosphates in the acceptor stem and TPsiC stem-loop
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
-
only class II CCA enzymes catalyze diphosphorolysis, the reaction can initiate from all three CCA positions and proceed processively until the removal of nucleotide C74. Diphosphorolysis enables class II enzymes to efficiently remove an incorrect A75 nucleotide from the 3' end, at a rate much faster than the rate of A75 incorporation, suggesting the ability to perform a previously unexpected quality control mechanism for CCA synthesis. No activity with non-tRNA substrate U2 snRNA, but EcCCA is active with non-tRNA substrate BMV TLSTyr and removes the terminalA nucleotide without proceeding further. The enzyme shows a robust activity with tRNA-A75, degrading it down to tRNA-A73 (by 50%) while showing a minor activity with tRNA-C76 (less than 5% substrate conversion) and no activity with tRNA-A74. The incorrect A75 is more readily removed than it is synthesized, suggesting a quality control mechanism that can improve the overall accuracy of CCA synthesis
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
NTSFIII is inactive with CTP and tRNAAsp-C as substrates
-
-
?
additional information
?
-
Halalkalibacterium halodurans
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
Halalkalibacterium halodurans
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
the enzyme catalyses a unique template-independent but sequence-specific nucleotide polymerization reaction, active site structure and molecular mechanism, overview. Construction of a corkscrew model for CCA addition that includes a fixed active site and a traveling tRNA-binding region formed by flexible parts of the protein
-
-
?
additional information
?
-
-
the enzyme catalyses a unique template-independent but sequence-specific nucleotide polymerization reaction, active site structure and molecular mechanism, overview. Construction of a corkscrew model for CCA addition that includes a fixed active site and a traveling tRNA-binding region formed by flexible parts of the protein
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
additional information
?
-
-
only class II CCA enzymes catalyze diphosphorolysis, the reaction can initiate from all three CCA positions and proceed processively until the removal of nucleotide C74. Diphosphorolysis enables class II enzymes to efficiently remove an incorrect A75 nucleotide from the 3' end, at a rate much faster than the rate of A75 incorporation, suggesting the ability to perform a previously unexpected quality control mechanism for CCA synthesis. No activity with non-tRNA substrate BMVTLSTyr or U2 snRNA. The enzyme shows a robust activity with tRNA-A75, degrading it down to tRNA-A73 (by 50%) while showing a minor activity with tRNA-C76 (less than 5% substrate conversion) and no activity with tRNA-A74. The incorrect A75 is more readily removed than it is synthesized, suggesting a quality control mechanism that can improve the overall accuracy of CCA synthesis
-
-
?
additional information
?
-
-
enzyme accepts normal tRNA precursors as well as mitochondrial miniaturized hairpin-like tRNA molecules that lack D- as well as T-arms
-
-
-
additional information
?
-
-
the CCA-adding enzymes can use three different substrates: tRNAs lacking one, i.e. tRNA-CC, two, i.e. tRNA-C, or all three 3'-terminal nucleotides, tRNA. The Sulfolobus shibatae CCA-adding enzyme forms a stable complex with tRNA. The CCA-adding enzyme recognizes primarily the top half tRNA minihelix
-
-
?
additional information
?
-
-
the tRNA substrate must remain fixed on the enzyme surface during CA addition, tRNA-C cross-linked to the enzyme remains fully active for addition of CTP and ATP. The growing 3'-terminus of the tRNA progressively refolds to allow the solitary active site to reuse a single CTP binding site. The ATP binding site is then created collaboratively by the refolded CCterminus and the enzyme, and nucleotide addition ceases when the nucleotide binding pocket is full. The template for CCA addition is a dynamic ribonucleoprotein structure. Both CTP addition to tRNA-C and ATP addition to tRNA-CC are dramatically inhibited by alkylation of the same tRNA phosphates in the acceptor stem and TPsiC stem-loop
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
class 2 enzymes select the nucleotides to be incorporated by a true amino acid template that consists of the three highly conserved residues glutamic acid, aspartic acid and arginine (EDxxR). The arginine residue forms hydrogen bonds with ATP (1 bond) and CTP (2 bonds), assisted by aspartate that contributes one hydrogen bond
-
-
?
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
additional information
?
-
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
-
r
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA precursor + 2 CTP + ATP
a tRNA with a 3' CCA end + 3 diphosphate
-
-
-
?
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
-
-
-
r
a tRNA with a 3' CCA end + 3 diphosphate
a tRNA precursor + 2 CTP + ATP
-
-
-
-
r
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
the specific recognition of deaminated bases by polymerase PolB1 may represent an initial step in their repair while polymerase PolY1 may be involved in damage tolerance at the replication fork. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
deoxynucleoside triphosphate + DNAn
diphosphate + DNAn+1
-
the specific recognition of deaminated bases by polymerase PolB1 may represent an initial step in their repair while polymerase PolY1 may be involved in damage tolerance at the replication fork. The deaminated bases can be introduced into DNA enzymatically, since both PolB1 and PolY1 are able to incorporate the aberrant DNA precursors dUTP and dITP
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
the CCA-adding enzymes can use three different substrates: tRNAs lacking one, i.e. tRNA-CC, two, i.e. tRNA-C, or all three 3'-terminal nucleotides, tRNA. The CCA-adding enzyme recognizes primarily the top half tRNA minihelix
-
-
?
additional information
?
-
the HD domain of the enzyme also exhibits 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and Ni2+-dependent phosphatase activities, overview
-
-
?
additional information
?
-
-
the HD domain of the enzyme also exhibits 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and Ni2+-dependent phosphatase activities, overview
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
Halalkalibacterium halodurans
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
the enzyme catalyses a unique template-independent but sequence-specific nucleotide polymerization reaction, active site structure and molecular mechanism, overview. Construction of a corkscrew model for CCA addition that includes a fixed active site and a traveling tRNA-binding region formed by flexible parts of the protein
-
-
?
additional information
?
-
-
the enzyme catalyses a unique template-independent but sequence-specific nucleotide polymerization reaction, active site structure and molecular mechanism, overview. Construction of a corkscrew model for CCA addition that includes a fixed active site and a traveling tRNA-binding region formed by flexible parts of the protein
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
additional information
?
-
-
the CCA-adding enzymes can use three different substrates: tRNAs lacking one, i.e. tRNA-CC, two, i.e. tRNA-C, or all three 3'-terminal nucleotides, tRNA. The Sulfolobus shibatae CCA-adding enzyme forms a stable complex with tRNA. The CCA-adding enzyme recognizes primarily the top half tRNA minihelix
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
CCA-adding enzymes recognize tRNA and tRNA-like structures as substrates, select and discriminate the correct nucleotides CTP and ATP against UTP and GTP, and, after incorporation of two C residues, the nucleotide specificity has to switch towards ATP without the help of a nucleic acid template. The enzymes have to stop polymerization exactly after three positions and recognize partial CCA-ends and add only the missing residues for completion, instead of stubbornly adding CCA-ends to their substrates, overview
-
-
?
additional information
?
-
-
the specific enzyme incorporates only a highly restricted number of nucleotides in a tRNA primer and then stops polymerization at a high efficiency and accuracy. It selects exclusively CTP and ATP for incorporation and discriminates strongly against the other two nucleotide triphosphates. It does not require a nucleic acid template for directing order and nature of nucleotides to be inserted and is highly selective for tRNA-like structures as a polymerization substrate. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
-
-
?
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Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
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Agammaglobulinemia
A Novel Homozygous TRNT1 Mutation in a Child With an Early Diagnosis of Common Variable Immunodeficiency Leading to Mild Hypogammaglobulinemia and Hemolytic Anemia.
Agammaglobulinemia
Novel biallelic TRNT1 mutations resulting in sideroblastic anemia, combined B and T cell defects, hypogammaglobulinemia, recurrent infections, hypertrophic cardiomyopathy and developmental delay.
Anemia
A Novel Homozygous TRNT1 Mutation in a Child With an Early Diagnosis of Common Variable Immunodeficiency Leading to Mild Hypogammaglobulinemia and Hemolytic Anemia.
Anemia
Genotype/phenotype correlations of childhood-onset congenital sideroblastic anaemia in a European cohort.
Anemia
Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis.
Anemia
Impaired activity of CCA-adding enzyme TRNT1 impacts OXPHOS complexes and cellular respiration in SIFD patient-derived fibroblasts.
Anemia, Hemolytic
A Novel Homozygous TRNT1 Mutation in a Child With an Early Diagnosis of Common Variable Immunodeficiency Leading to Mild Hypogammaglobulinemia and Hemolytic Anemia.
Anemia, Sideroblastic
A phenotypic expansion of TRNT1 associated sideroblastic anemia with immunodeficiency, fevers, and developmental delay.
Anemia, Sideroblastic
Atypical SIFD with novel TRNT1 mutations: a case study on the pathogenesis of B-cell deficiency.
Anemia, Sideroblastic
Biallelic TRNT1 variants in a child with B cell immunodeficiency, periodic fever and developmental delay without sideroblastic anemia (SIFD variant).
Anemia, Sideroblastic
Diseases Associated with Defects in tRNA CCA Addition.
Anemia, Sideroblastic
Expanding the Phenotype of TRNT1-Related Immunodeficiency to Include Childhood Cataract and Inner Retinal Dysfunction.
Anemia, Sideroblastic
Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis.
Anemia, Sideroblastic
Impaired activity of CCA-adding enzyme TRNT1 impacts OXPHOS complexes and cellular respiration in SIFD patient-derived fibroblasts.
Anemia, Sideroblastic
In vitro studies of disease-linked variants of human tRNA nucleotidyltransferase reveal decreased thermal stability and altered catalytic activity.
Anemia, Sideroblastic
Mutations in TRNT1 cause congenital sideroblastic anemia with immunodeficiency, fevers, and developmental delay (SIFD).
Anemia, Sideroblastic
Neutrophilic dermatosis: a new skin manifestation and novel pathogenic variant in a rare autoinflammatory disease.
Anemia, Sideroblastic
Novel biallelic TRNT1 mutations resulting in sideroblastic anemia, combined B and T cell defects, hypogammaglobulinemia, recurrent infections, hypertrophic cardiomyopathy and developmental delay.
Anemia, Sideroblastic
SIFD as a novel cause of severe fetal hydrops and neonatal anaemia with iron loading and marked extramedullary haemopoiesis.
Anemia, Sideroblastic
Two cases of sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay (SIFD) syndrome in Chinese Han children caused by novel compound heterozygous variants of the TRNT1 gene.
Brain Diseases
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Breast Neoplasms
Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme.
Cardiomyopathies
Atypical SIFD with novel TRNT1 mutations: a case study on the pathogenesis of B-cell deficiency.
Cardiomyopathies
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Cardiomyopathy, Hypertrophic
Novel biallelic TRNT1 mutations resulting in sideroblastic anemia, combined B and T cell defects, hypogammaglobulinemia, recurrent infections, hypertrophic cardiomyopathy and developmental delay.
Cataract
Atypical SIFD with novel TRNT1 mutations: a case study on the pathogenesis of B-cell deficiency.
Cataract
Expanding the Phenotype of TRNT1-Related Immunodeficiency to Include Childhood Cataract and Inner Retinal Dysfunction.
cca trna nucleotidyltransferase deficiency
Atypical SIFD with novel TRNT1 mutations: a case study on the pathogenesis of B-cell deficiency.
cca trna nucleotidyltransferase deficiency
TRNT1 deficiency: clinical, biochemical and molecular genetic features.
Common Variable Immunodeficiency
A Novel Homozygous TRNT1 Mutation in a Child With an Early Diagnosis of Common Variable Immunodeficiency Leading to Mild Hypogammaglobulinemia and Hemolytic Anemia.
Epilepsy
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Hearing Loss, Sensorineural
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Infections
Novel biallelic TRNT1 mutations resulting in sideroblastic anemia, combined B and T cell defects, hypogammaglobulinemia, recurrent infections, hypertrophic cardiomyopathy and developmental delay.
Iron Overload
Genotype/phenotype correlations of childhood-onset congenital sideroblastic anaemia in a European cohort.
Metabolic Diseases
TRNT1 deficiency: clinical, biochemical and molecular genetic features.
Mitochondrial Diseases
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Neoplasm Metastasis
[Spinal cord metastasis of anaplastic oligodendroglioma of the brain without recurrence of primary tumor. Ccase report and literature review].
Neoplasms
Inhibition of transfer ribonucleic acid nucleotidyl transferase (EC 2.7.7.25) from Ehrlich tumor cells by proflavine sulfate and ethidium bromide.
Neoplasms
[Spinal cord metastasis of anaplastic oligodendroglioma of the brain without recurrence of primary tumor. Ccase report and literature review].
Obesity
Obesity-insulin targeted genes in the 3p26-25 region in human studies and LG/J and SM/J mice.
Obesity, Abdominal
Obesity-insulin targeted genes in the 3p26-25 region in human studies and LG/J and SM/J mice.
Oligodendroglioma
[Spinal cord metastasis of anaplastic oligodendroglioma of the brain without recurrence of primary tumor. Ccase report and literature review].
Retinal Dystrophies
Expanding the Phenotype of TRNT1-Related Immunodeficiency to Include Childhood Cataract and Inner Retinal Dysfunction.
Retinitis Pigmentosa
Atypical SIFD with novel TRNT1 mutations: a case study on the pathogenesis of B-cell deficiency.
Retinitis Pigmentosa
Diseases Associated with Defects in tRNA CCA Addition.
Retinitis Pigmentosa
Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis.
Retinitis Pigmentosa
In vitro studies of disease-linked variants of human tRNA nucleotidyltransferase reveal decreased thermal stability and altered catalytic activity.
Retinitis Pigmentosa
TRNT1 deficiency: clinical, biochemical and molecular genetic features.
Seizures
Contribution of nuclear and mitochondrial gene mutations in mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome.
Thrombocytosis
Genotype/phenotype correlations of childhood-onset congenital sideroblastic anaemia in a European cohort.
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0.008 - 0.119
a tRNA precursor
-
0.0013 - 0.00477
armless tRNA(Arg) precursor
-
0.002 - 0.00784
armless tRNA(Ile) precursor
-
0.00301 - 0.00466
tRNA(Phe) precursor
-
0.0029
tRNAHis+G-1
pH and temperature not specified in the publication, recombinant enzyme
-
0.0016
tRNAHisDELTAG-1
pH and temperature not specified in the publication, recombinant enzyme
-
additional information
ATP
0.008
a tRNA precursor
mutant D139A, pH not specified in the publication, temperature not specified in the publication
-
0.012
a tRNA precursor
-
wild-type, pH 9.0, 37°C
-
0.012
a tRNA precursor
-
the mutant with alterations at the extreme C-terminus of the tail domain, pH 9.0, 37°C
-
0.119
a tRNA precursor
wild-type, pH not specified in the publication, temperature not specified in the publication
-
0.0013
armless tRNA(Arg) precursor
-
addition of 2C + A, pH 7.6, 20°C
-
0.0013
armless tRNA(Arg) precursor
addition of 2C, pH 7.6, 20°C
-
0.00169
armless tRNA(Arg) precursor
-
addition of 2C, pH 7.6, 20°C
-
0.00477
armless tRNA(Arg) precursor
addition of 2C + A, pH 7.6, 20°C
-
0.002
armless tRNA(Ile) precursor
addition of 2C + A, pH 7.6, 20°C
-
0.00543
armless tRNA(Ile) precursor
-
addition of 2C, pH 7.6, 20°C
-
0.00558
armless tRNA(Ile) precursor
addition of 2C, pH 7.6, 20°C
-
0.00784
armless tRNA(Ile) precursor
-
addition of 2C + A, pH 7.6, 20°C
-
0.004
ATP
pH 7.6, 25°C
0.054
ATP
pH 8.1, 70°C, mutant enzyme A75C
0.233
ATP
A76 addition, pH and temperature not specified in the publication, mutant enzyme P295G
0.263
ATP
pH 8.1, 70°C, mutant enzyme V34C
0.3
ATP
A76 addition, pH and temperature not specified in the publication, wild-type enzyme
0.35
ATP
A76 addition, pH and temperature not specified in the publication, mutant enzyme P295T
0.5
ATP
pH 8.1, 70°C, wild-type enzyme
7.64
ATP
A76 addition, pH and temperature not specified in the publication, mutant enzyme P295A
12.5
ATP
A76 addition, pH and temperature not specified in the publication, mutant enzyme P295SA
0.01
CTP
C74 addition, pH and temperature not specified in the publication, mutant enzyme P295G
0.01
CTP
C74 addition, pH and temperature not specified in the publication, wild-type enzyme
0.015
CTP
pH 9.0, 70°C, wild-type enzyme
0.02
CTP
pH 9.0, 70°C, mutant enzyme R125A
0.025
CTP
C74 addition, pH and temperature not specified in the publication, mutant enzyme P295T
0.025
CTP
C75 addition, pH and temperature not specified in the publication, mutant enzyme P295T
0.03
CTP
pH 9.0, 70°C, in presence of 0.1 mM each of UTP, ATP and GTP
0.03
CTP
pH 9.0, 70°C, mutant enzyme E92F
0.033
CTP
pH 9.0, 70°C, mutant enzyme Y158A
0.037
CTP
C74 addition, pH and temperature not specified in the publication, mutant enzyme P295A
0.04
CTP
C75 addition, pH and temperature not specified in the publication, mutant enzyme P295A
0.04
CTP
pH 9.0, 70°C, mutant enzyme H129A
0.057
CTP
pH 9.0, 70°C, mutant enzyme K153A
0.062
CTP
pH 9.0, 70°C, mutant enzyme Y90E/E92F
0.067
CTP
pH 9.0, 70°C, mutant enzyme H93V/Y95V
0.09
CTP
C75 addition, pH and temperature not specified in the publication, mutant enzyme P295G
0.1
CTP
pH 9.0, 70°C, mutant enzyme G166R
0.142
CTP
pH 9.0, 70°C, mutant enzyme G169R
0.145
CTP
pH 8.1, 70°C, mutant enzyme A75C
0.167
CTP
pH 9.0, 70°C, mutant enzyme K149A
0.175
CTP
C75 addition, pH and temperature not specified in the publication, wild-type enzyme
0.2
CTP
C74 addition, pH and temperature not specified in the publication, mutant enzyme P295SA
0.366
CTP
pH 8.1, 70°C, mutant enzyme V34C
0.515
CTP
pH 8.1, 70°C, wild-type enzyme
0.65
CTP
C75 addition, pH and temperature not specified in the publication, mutant enzyme P295SA
0.5
diphosphate
-
pH not specified in the publication, 37°C, diphosphorolysis reaction with substrate tRNA-C75
0.6
diphosphate
-
pH not specified in the publication, 37°C, diphosphorolysis reaction with substrate tRNA-C74
1
diphosphate
-
pH not specified in the publication, 37°C, diphosphorolysis reaction with substrate tRNA-A76
0.00301
tRNA(Phe) precursor
-
addition of 2C, pH 7.6, 20°C
-
0.00412
tRNA(Phe) precursor
addition of 2C, pH 7.6, 20°C
-
0.00428
tRNA(Phe) precursor
addition of 2C + A, pH 7.6, 20°C
-
0.00466
tRNA(Phe) precursor
-
addition of 2C + A, pH 7.6, 20°C
-
additional information
ATP
pH 9.0, 70°C, the initial velocity is a linear function of ATP from 0.015 to 0.2 mM, suugesting that the Km for ATP in presence of each UTP, GTP and CTP is much higher than 0.03 mM
additional information
ATP
-
pH 9.0, 70°C, the initial velocity is a linear function of ATP from 0.015 to 0.2 mM, suugesting that the Km for ATP in presence of each UTP, GTP and CTP is much higher than 0.03 mM
additional information
additional information
-
kinetic parameters of diphosphorolysis from A76, C75, and C74, overview
-
additional information
additional information
steady-state Michaelis-Menten kinetics, overview. As the limited solubility properties of RNA do not allow for using excessive saturating conditions in these analyses, the obtained parameters represent apparent values typical for CCA-addition kinetics. Kinetic analysis of CCA-addition for both tRNA variants
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evolution
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a class I CCA-adding enzyme. CCA-adding enzymes are essential RNA polymerases that emerged twice in evolution leading to different structural characteristics and unusual mechanistic solutions for an error-free and sequence-specific CCA polymerization reaction. The catalytic cleft is formed by the head, neck, and body domains. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
a class I CCA-adding enzyme. CCA-adding enzymes are essential RNA polymerases that emerged twice in evolution leading to different structural characteristics and unusual mechanistic solutions for an error-free and sequence-specific CCA polymerization reaction. The catalytic cleft is formed by the head, neck, and body domains. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
a class II CCA-adding enzyme. Compared to class I, class II CCA-adding enzymes show a much higher evolutionary conservation of individual catalytic core motifs. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
a class II CCA-adding enzyme. Compared to class I, class II CCA-adding enzymes show a much higher evolutionary conservation of individual catalytic core motifs. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
a class II CCA-adding enzyme. Compared to class I, class II CCA-adding enzymes show a much higher evolutionary conservation of individual catalytic core motifs. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
a class II CCA-adding enzyme. Compared to class I, class II CCA-adding enzymes show a much higher evolutionary conservation of individual catalytic core motifs. The templating motif carries the sequence DDxxR, a slight deviation from the usual EDxxR motif. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
CCA-adding enzymes are essential RNA polymerases that emerged twice in evolution leading to different structural characteristics and unusual mechanistic solutions for an error-free and sequence-specific CCA polymerization reaction. Evolution of class I and class II CCA-adding enzymes as well as poly(A) polymerases, overview
evolution
-
diphosphorolysis of class II enzymes establishes a fundamental difference from class I enzymes, and it is achieved only with the tRNA structure and with specific divalent metal ions
evolution
-
diphosphorolysis of class II enzymes establishes a fundamental difference from class I enzymes, and it is achieved only with the tRNA structure and with specific divalent metal ions
evolution
-
diphosphorolysis of class II enzymes establishes a fundamental difference from class I enzymes, and it is achieved only with the tRNA structure and with specific divalent metal ions
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
Halalkalibacterium halodurans
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. Class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. In class 2 enzymes, only the head domain carries a beta sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
evolution
-
with a possible origin of ancient telomerase-like activity, the CCA-adding enzymes obviously emerged twice during evolution, leading to structurally different, but functionally identical enzymes. While the enzyme class 1 is exclusively found in archaea, class 2 tRNA-nucleotidyltransferases are present in eukaryotes and bacteria. In class 2 enzymes, only the head domain carries a beta sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure. The chemical mechanism underlying the polymerization appears conserved in all polymerases across the three kingdoms of life
malfunction
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CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
Halalkalibacterium halodurans
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CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
CCA ends with misincorporated nucleotides are only rarely detected. Only under rather artificial in vitro conditions, e.g. in the presence of Mn2+ ions instead of Mg2+ or deviating NTP concentrations, incorporation of CCC as well as poly(C) tails can be observed
malfunction
-
mutations around the active site of the Sulfolobus shibatae enzyme interfere with CCA-addition, but have only a minor affect on tRNA binding
malfunction
-
mutations around the active site of the Sulfolobus shibatae enzyme interfere with CCA-addition, but have only a minor affect on tRNA binding
malfunction
-
mutations around the active site of the Sulfolobus shibatae enzyme interfere with CCA-addition, but have only a minor affect on tRNA binding
malfunction
-
mutations around the active site of the Sulfolobus shibatae enzyme interfere with CCA-addition, but have only a minor affect on tRNA binding
malfunction
-
mutations around the active site of the Sulfolobus shibatae enzyme interfere with CCA-addition, but have only a minor affect on tRNA binding
malfunction
-
the enzyme knockout phenotype is a dramatic growth impairment, indicating the repair function of the CCA-adding enzyme on defective tRNAs lacking CCA ends due to hydrolytic damage
metabolism
comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus
metabolism
comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus. The cold-adapted polymerases show a remarkable error rate during CCA synthesis in vitro as well as in vivo. CCA-adding activity at low temperatures is achieved at the expense of structural stability, and results in a reduced polymerization fidelity
metabolism
comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus. The cold-adapted polymerases show a remarkable error rate during CCA synthesis in vitro as well as in vivo. CCA-adding activity at low temperatures is achieved at the expense of structural stability, and results in a reduced polymerization fidelity
metabolism
comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus. The cold-adapted polymerases show a remarkable error rate during CCA synthesis in vitro as well as in vivo. CCA-adding activity at low temperatures is achieved at the expense of structural stability, and results in a reduced polymerization fidelity
metabolism
in eukaryotes including yeast, both 3'-CCA and 5'-G-1 are added posttranscriptionally by tRNA nucleotidyltransferase and tRNAHis guanylyltransferase, respectively. These two cytosolic enzymes might compete for the same tRNA, but tRNAHis guanylyltransferase clearly prefers a substrate carrying a CCA terminus. Thus, although many tRNA maturation steps can occur in a rather random order, pathway where CCA-addition precedes G-1 incorporation is likely in Saccharomyces cerevisiae. The 3'-CCA triplet and a discriminator position A73 act as positive elements for G-1 incorporation, ensuring the fidelity of G-1 addition. Sequential order of tRNAHis processing, overview. The enzymes do not compete for the substrate. Instead, the differing substrate preferences lead to a sequential order of nucleotide incorporation at 5'- and 3'-ends, resulting in a mature tRNAHis in the cytosol
metabolism
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under exponential growth conditions, a significant fraction of tRNAs with damaged CCA-tails is found and this fraction decreases upon transition into stationary phase. tRNAs bearing guanine as a discriminator base are generally unaffected by CCA-tail damage. The knockout of the repairing CCA-adding enzyme significantly reduces tRNA integrity, and tRNACys integrity is reduced from 82% in wild-type to 40% in the knockout strain. Even slight reduction of CCA integrity in exponential phase tRNA results in reduced protein synthesis
metabolism
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comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus
-
metabolism
-
comparison of the corresponding enzymes of Exiguobacterium sibiricum that is able to tolerate temperatures of -2.5°C and Planococcus halocryophilus, growing at -15°C, and those of Bacillus subtilis subsp. subtilis and Geobacillus stearothermophilus. The cold-adapted polymerases show a remarkable error rate during CCA synthesis in vitro as well as in vivo. CCA-adding activity at low temperatures is achieved at the expense of structural stability, and results in a reduced polymerization fidelity
-
metabolism
-
under exponential growth conditions, a significant fraction of tRNAs with damaged CCA-tails is found and this fraction decreases upon transition into stationary phase. tRNAs bearing guanine as a discriminator base are generally unaffected by CCA-tail damage. The knockout of the repairing CCA-adding enzyme significantly reduces tRNA integrity, and tRNACys integrity is reduced from 82% in wild-type to 40% in the knockout strain. Even slight reduction of CCA integrity in exponential phase tRNA results in reduced protein synthesis
-
metabolism
-
in eukaryotes including yeast, both 3'-CCA and 5'-G-1 are added posttranscriptionally by tRNA nucleotidyltransferase and tRNAHis guanylyltransferase, respectively. These two cytosolic enzymes might compete for the same tRNA, but tRNAHis guanylyltransferase clearly prefers a substrate carrying a CCA terminus. Thus, although many tRNA maturation steps can occur in a rather random order, pathway where CCA-addition precedes G-1 incorporation is likely in Saccharomyces cerevisiae. The 3'-CCA triplet and a discriminator position A73 act as positive elements for G-1 incorporation, ensuring the fidelity of G-1 addition. Sequential order of tRNAHis processing, overview. The enzymes do not compete for the substrate. Instead, the differing substrate preferences lead to a sequential order of nucleotide incorporation at 5'- and 3'-ends, resulting in a mature tRNAHis in the cytosol
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physiological function
-
CCA transferase participates in the maturation of tRNA lacking a CCA 3'-end
physiological function
all tRNA molecules carry the invariant sequence CCA at their 3'-terminus for amino acid attachment. The post-transcriptional addition of CCA is carried out by ATP(CTP):tRNA nucleotidyltransferase, also called CCase. This enzyme catalyses a unique template-independent but sequence-specific nucleotide polymerization reaction
physiological function
in all mature tRNAs, the 3'-terminal CCA sequence is synthesized or repaired by the template-independent nucleotidyltransferase ATP(CTP):tRNA nucleotidyltransferase. The phosphohydrolase activities of the HD domain of the tRNA nucleotidyltransferase are involved in the repair of the 3'-CCA end of tRNA, modeling, overview
physiological function
-
CCA enzymes catalyze stepwise CCA addition to the tRNA 3' end at positions 74--76 as an obligatory sequence for tRNA activity in the cell
physiological function
-
CCA enzymes catalyze stepwise CCA addition to the tRNA 3' end at positions 74-76 as an obligatory sequence for tRNA activity in the cell. Only class II CCA enzymes catalyze pyrophosphorolysis, the reaction can initiate from all three CCA positions and proceed processively until the removal of nucleotide C74. Diphosphorolysis enables class II enzymes to efficiently remove an incorrect A75 nucleotide from the 3' end, at a rate much faster than the rate of A75 incorporation, suggesting the ability to perform a previously unexpected quality control mechanism for CCA synthesis
physiological function
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CCA enzymes catalyze stepwise CCA addition to the tRNA 3' end at positions 7476 as an obligatory sequence for tRNA activity in the cell. Only class II CCA enzymes catalyze pyrophosphorolysis, the reaction can initiate from all three CCA positions and proceed processively until the removal of nucleotide C74. Diphosphorolysis enables class II enzymes to efficiently remove an incorrect A75 nucleotide from the 3' end, at a rate much faster than the rate of A75 incorporation, suggesting the ability to perform a previously unexpected quality control mechanism for CCA synthesis
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Second, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Second, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms, but in Escherichia coli, on the other hand, where CCA ends are encoded, this enzyme is dispensable, and a corresponding gene knockout is not lethal, but the repair function of the CCA-adding enzyme on defective tRNAs lacking CCA ends due to hydrolytic damage is required
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Secondly, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Secondly, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Secondly, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Secondly, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
CCA-adding enzymes represent vital components of the cell's tRNA maturation and maintenance system. The CCA end, added to the tRNA by the CCA tRNA nucleotidyltransferase, is the site of aminoacylation, and aminoacyl tRNA synthetases fuse the individual amino acids to the ribose moiety of the terminal A residue. Secondly, the CCA terminus is required for the correct positioning of the aminoacyl-tRNA in the ribosome's A- and P-site in order to guarantee an efficient peptidyl transfer reaction. The CCA-adding enzyme represents an essential activity in the majority of organisms
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
Halalkalibacterium halodurans
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tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
-
tRNA-nucleotidyltransferases are RNA polymerases responsible for the synthesis of the nucleotide triplet CCA at the 3'-terminus of tRNAs. As this CCA end represents an essential functional element for aminoacylation and translation, the CCA-adding enzymes are of vital importance in all organisms. The enzyme fulfills both functions in maintenance/repair as well as de novo polymerization
physiological function
the enzyme synthesizes and repairs the 3'-terminal CCA sequence of tRNA
physiological function
conserved motif C in CCA-adding enzyme forms a flexible spring element modulating the relative orientation of the enzyme's head and body domains to accommodate the growing 3'-end of the tRNA. These conformational transitions initiate the rearranging of the templating amino acids to switch the specificity of the nucleotide binding pocket from CTP to ATP during CCA-synthesis
physiological function
enzyme terminates RNA synthesis after completion of 3'-CCA addition, and discriminates 3'-mature tRNA from 3'-immature tRNA. After completion of 3'-CCA addition at the catalytic site, the 3'-CCA refolds and relocates to the release site, which is discrete from the catalytic site. The 3'-CCA forms a continuously stacked, stable conformation together with the enzyme. Consequently, the 3'-mature tRNA rotates relative to the surface of the enzyme, and only the 3'-mature tRNA is ready for release. The 3'-regions of immature tRNAs cannot form the stable stacking conformation in the release site. Thus, the 3' end is relocated in the catalytic site, and the 3'-CCA is reconstructed
physiological function
whereas CCA is added to stable tRNAs and tRNA-like transcripts, a second CCA repeat is added to certain unstable transcripts to initiate their degradation. Following the first CCA addition cycle, nucleotide binding to the active site triggers a clockwise screw motion, producing torque on the RNA. This ejects stable RNAs, whereas unstable RNAs are refolded while bound to the enzyme and subjected to a second CCA catalytic cycle. Intriguingly, with the CCA-adding enzyme acting as a molecular vise, the RNAs proofread themselves through differential responses to its interrogation between stable and unstable substrates
physiological function
-
identification of candidate non-tRNA substrates of CCA-adding enzyme, i.e. fourteen CCA-RNAs that only contain CCA as non-genomic sequences, and eleven NCCA-RNAs that contain CCA and other nucleotides as non-genomic sequences. All (N)CCA-RNAs are derived from the mitochondrial genome and are localized in mitochondria. Knockdown of CCA-adding enzyme severely reduces the expression levels of (N)CCA-RNAs
physiological function
introduction of a beta-turn element of the catalytic core into the human enzyme confers full CCA-adding activity on armless tRNAs. This region, identified to position the 3'-end of the tRNA primer in the catalytic core, dramatically increases the enzyme's substrate affinity. Conventional tRNA substrates bind to the enzyme by interactions with the T-arm, this is not possible in the case of armless tRNAs of the Romanomermis culicivorax mitochondrion
physiological function
-
introduction of a beta-turn element of the catalytic core into the human enzyme confers full CCA-adding activity on armless tRNAs. This region, identified to position the 3'-end of the tRNA primer in the catalytic core, dramatically increases the enzyme's substrate affinity. Conventional tRNA substrates bind to the enzyme by interactions with the T-arm, this is not possible in the case of armless tRNAs of the Romanomermis culicivorax mitochondrion. The beta-turn element compensates for an otherwise weak interaction and allows for the addition of a complete CCA-terminus
physiological function
-
knockdown of CAE results in the accumulation of truncated tRNAs, abolishes translation, and inhibits both total and mitochondrial CCA-adding activities. Mitochondrially localized tRNAs are much less affected by the CAE ablation than the other tRNAs. The N-terminal 10 amino acids of CAE are dispensable for its activity and mitochondrial localization and deletion of 10 further amino acids abolishes both. A growth arrest caused by the CAE knockdown is rescued by the expression of the cytosolic isoform of yeast CAE
physiological function
the 3'-CCA triplet and a discriminator position A73 act as positive elements for G-1 incorporation, ensuring the fidelity of G-1 addition. The CCA-adding enzyme catalyzes CCA incorporation on tRNAHis lacking G-1 (tRNAHisDELTAG-1) and tRNAHis+G-1 from Saccharomyces cerevisiae
physiological function
-
enzyme terminates RNA synthesis after completion of 3'-CCA addition, and discriminates 3'-mature tRNA from 3'-immature tRNA. After completion of 3'-CCA addition at the catalytic site, the 3'-CCA refolds and relocates to the release site, which is discrete from the catalytic site. The 3'-CCA forms a continuously stacked, stable conformation together with the enzyme. Consequently, the 3'-mature tRNA rotates relative to the surface of the enzyme, and only the 3'-mature tRNA is ready for release. The 3'-regions of immature tRNAs cannot form the stable stacking conformation in the release site. Thus, the 3' end is relocated in the catalytic site, and the 3'-CCA is reconstructed
-
physiological function
-
the 3'-CCA triplet and a discriminator position A73 act as positive elements for G-1 incorporation, ensuring the fidelity of G-1 addition. The CCA-adding enzyme catalyzes CCA incorporation on tRNAHis lacking G-1 (tRNAHisDELTAG-1) and tRNAHis+G-1 from Saccharomyces cerevisiae
-
physiological function
-
knockdown of CAE results in the accumulation of truncated tRNAs, abolishes translation, and inhibits both total and mitochondrial CCA-adding activities. Mitochondrially localized tRNAs are much less affected by the CAE ablation than the other tRNAs. The N-terminal 10 amino acids of CAE are dispensable for its activity and mitochondrial localization and deletion of 10 further amino acids abolishes both. A growth arrest caused by the CAE knockdown is rescued by the expression of the cytosolic isoform of yeast CAE
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additional information
-
class 1 enzymes have a tRNA-binding body domain consisting of a beta sheet with flanking alpha helices. Head and neck domains form the active site and are also composed of alpha-helical and beta-sheet elements, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
Halalkalibacterium halodurans
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
in class 2 enzymes, only the head domain carries a beta-sheet and forms the nucleotidyltransferase core, while neck, body and tail consist exclusively of alpha helices, giving the enzyme a hook- or seahorse-like overall structure, structure-function relationship, overview
additional information
-
structure-function relationship, overview
additional information
-
structure-function relationship, overview
additional information
-
structure-function relationship, overview. The active site is located in the N-terminal part of the enzyme and consists of five elements that are involved in metal ion binding, catalysis, ribose recognition, nucleotide selection, and templating. Motif A is located in the head domain and includes the general signature motif of all nucleotidyltransferases with the two metal-binding carboxylates DxD that are involved in catalysis and binding of the triphosphate moiety of the incoming nucleotides. The head domain carries motif B, where highly conserved residues play a critical role in discriminating between NTPs and dNTPs. The neck domain contains motif D, a single nucleotide-binding pocket that is specific for binding of CTP and ATP. Head and neck domain form a cleft that binds the incoming nucleotide as well as the 3'-end of the tRNA primer. The body and tail domains at the enzyme's C-terminus recognize the top-half region of the tRNA primer. The CCA-enzyme does not move along the tRNA during synthesis but remains at a fixed position
additional information
-
structure-function relationship, overview. The active site is located in the N-terminal part of the enzyme and consists of five elements that are involved in metal ion binding, catalysis, ribose recognition, nucleotide selection, and templating. Motif A is located in the head domain and includes the general signature motif of all nucleotidyltransferases with the two metal-binding carboxylates DxD that are involved in catalysis and binding of the triphosphate moiety of the incoming nucleotides. The head domain carries motif B, where highly conserved residues play a critical role in discriminating between NTPs and dNTPs. The neck domain contains motif D, a single nucleotide-binding pocket that is specific for binding of CTP and ATP. Head and neck domain form a cleft that binds the incoming nucleotide as well as the 3'-end of the tRNA primer. The body and tail domains at the enzyme's C-terminus recognize the top-half region of the tRNA primer. The CCA-enzyme does not move along the tRNA during synthesis but remains at a fixed position
additional information
-
structure-function relationship, overview. The active site is located in the N-terminal part of the enzyme and consists of five elements that are involved in metal ion binding, catalysis, ribose recognition, nucleotide selection, and templating. Motif A is located in the head domain and includes the general signature motif of all nucleotidyltransferases with the two metal-binding carboxylates DxD that are involved in catalysis and binding of the triphosphate moiety of the incoming nucleotides. The head domain carries motif B, where highly conserved residues play a critical role in discriminating between NTPs and dNTPs. The neck domain contains motif D, a single nucleotide-binding pocket that is specific for binding of CTP and ATP. Head and neck domain form a cleft that binds the incoming nucleotide as well as the 3'-end of the tRNA primer. The body and tail domains at the enzyme's C-terminus recognize the top-half region of the tRNA primer. The CCA-enzyme does not move along the tRNA during synthesis but remains at a fixed position
additional information
-
structure-function relationship, overview. The active site is located in the N-terminal part of the enzyme and consists of five elements that are involved in metal ion binding, catalysis, ribose recognition, nucleotide selection, and templating. Motif A is located in the head domain and includes the general signature motif of all nucleotidyltransferases with the two metal-binding carboxylates DxD that are involved in catalysis and binding of the triphosphate moiety of the incoming nucleotides. The head domain carries motif B, where highly conserved residues play a critical role in discriminating between NTPs and dNTPs. The neck domain contains motif D, a single nucleotide-binding pocket that is specific for binding of CTP and ATP. Head and neck domain form a cleft that binds the incoming nucleotide as well as the 3'-end of the tRNA primer. The body and tail domains at the enzyme's C-terminus recognize the top-half region of the tRNA primer. The CCA-enzyme does not move along the tRNA during synthesis but remains at a fixed position
additional information
-
structure-function relationship, overview. The enzyme binds the tRNA top half in the correct orientation for CCA-addition in a cleft, the tRNA acceptor stem interacts with a highly conserved long alpha-helical element in an almost parallel orientation. In the position of nucleotide addition, the 3'-end is bound to the active site located in the enzyme's head domain, while the T loop of the tRNA contacts the tail domain. The bound tRNA substrate remains fixed at its binding site in the enzyme during the complete nucleotide incorporation process
additional information
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the CCA enzymes are unusual RNA polymerases, which catalyze CCA addition to positions 74-76 at the tRNA 3' end without using a nucleic acid template, reaction mechanism of CCA addition and reverse phosphorolysis reaction, overview
additional information
-
the CCA enzymes are unusual RNA polymerases, which catalyze CCA addition to positions 74-76 at the tRNA 3' end without using a nucleic acid template, reaction mechanism of CCA addition and reverse phosphorolysis reaction, overview
additional information
-
the CCA enzymes are unusual RNA polymerases, which catalyze CCA addition to positions 74-76 at the tRNA 3' end without using a nucleic acid template, reaction mechanism of CCA addition, overview
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P295A
kcat /Km for C74 addition is 28% of wild-type value, kcat /Km for C75 addition is 33% of wild-type value, kcat /Km for A76 addition is 1% of wild-type value
P295G
kcat /Km for C74 addition is 94% of wild-type value, kcat /Km for C75 addition is 15% of wild-type value, kcat /Km for A76 addition is 129% of wild-type value
P295S
kcat /Km for C74 addition is 3% of wild-type value, kcat /Km for C75 addition is 1% of wild-type value, kcat /Km for A76 addition is 1% of wild-type value
P295T
kcat /Km for C74 addition is 36% of wild-type value, kcat /Km for C75 addition is 67% of wild-type value, kcat /Km for A76 addition is 92% of wild-type value
D139A
mutant shows a strong reduction in the addition of the terminal A position
G143A
similar to wild-type, mutant catalyzes the addition of the complete CCA sequence
L166S
and T154I, compound heterozygous mutation identified in a patient with sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay
R153A
similar to wild-type, mutant catalyzes the addition of the complete CCA sequence
R190I
homozygous mutation identified in a patient with sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay
T154I
and L166S, compound heterozygous mutation identified in a patient with sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay
K74N
-
mutant is considerably affected in incorporating the terminal A residue to mitochondrial armless tRNA
K89DELTA/V90E
-
mutant is able to added a full CCA-end to mitochondrial armless tRNA, somehow less efficient than wild-type
A75C
as compared to wild-type enzyme the Km increases 2.7-fold from A addition to C addition, while the kcat decreased 14fold. The overall kcat/Km ratio of C addition to A addition is 0.03
D124A
mutation has no effect on CCA-adding activity
D143A
mutation has no effect on CCA-adding activity
D218A
mutation has no effect on CCA-adding activity
E104A
mutation has no effect on CCA-adding activity
E114A
mutation has no effect on CCA-adding activity
E139A
mutation has no effect on CCA-adding activity
E144A
mutation has no effect on CCA-adding activity
E161A
mutation has no effect on CCA-adding activity
E209A
mutation has no effect on CCA-adding activity
E92F
the mutant is nearly inactive for CCA addition, although tRNA binding is apparently normal
G156D
neither CTP- nor ATP-adding activity is significantly affected
G166R
C74-adding is 7% of wild-type activity, C75-adding is 8% of wild-type activity, A76-adding is 21% of wild-type activity
G169R
C74-adding is 5% of wild-type activity, C75-adding is 2% of wild-type activity, A76-adding is 22% of wild-type activity
H129A
C74-adding is 22% of wild-type activity, C75-adding is 28% of wild-type activity, A76-adding is 87% of wild-type activity
H93V
the mutant adds C74 and C75 but fails to add A76
H93V/Y95V
the mutant enzyme is completely inactive for CCA addition
K149A
no C74-adding activity, C75-adding is 1% of wild-type activity, A76-adding is 1% of wild-type activity
K153A
C74-adding is 14% of wild-type activity, C75-adding is 4% of wild-type activity, A76-adding is 3% of wild-type activity
R125A
C74-adding is 30% of wild-type activity, C75-adding is 10% of wild-type activity, A76-adding is 5% of wild-type activity
V34C
as compared to wild-type enzyme the Km increases 1.4fold from A addition to C addition, while the kcat decreases 18fold. The overall kcat/Km ratio of C addition to A addition is 0.04
Y158A
C74-adding is 9% of wild-type activity, C75-adding is 15% of wild-type activity, A76-adding is 7% of wild-type activity
Y90E
the mutant is nearly wild type for CCA addition despite replacement of a conserved bulky hydrophobic residue by a carboxylate
Y90E/E92F
the mutant enzyme is completely inactive for CCA addition
D106A
CTP-adding activity is 90% of wild-type level, ATP-adding activities is 14% of wild-type level
D106A
mutation has no effect on CCA-adding activity
D215A
CTP-adding activity is 16% of wild-type level, ATP-adding activities is 13% of wild-type level
D215A
mutation has no effect on CCA-adding activity
E173A
CTP-adding activity is 19% of wild-type level, ATP-adding activities is 7% of wild-type level
E173A
mutation has no effect on CCA-adding activity
additional information
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construction of variants bearing modifications within the body domain and bearing alterations at the extreme C-terminus of the tail domain. Mutations do not alter the overall secondary structure of the proteins to a large extent. Like wild-type, the mutant with alterations at the extreme C-terminus of the tail domain also adds a complete CCA sequence, while the mutant with modifications within the body domain and a double mutant show a complete loss of activity. A variant lacking the C-terminal nine amino acids shows a reduced rate of CCA addition in vitro when compared with the native enzyme or the mutant with alterations at the extreme C-terminus. The first five amino acids of the N-terminal signal sequence are required for efficient translocation into mitochondria. Variants lacking the first start codon show less mitochondrial import. Mutations in the mature domain reduce the localization tomitochondria and in turn enhance the translocation into chloroplasts
additional information
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construction of a conditional CCA transferase mutant that exhibits a 20% increase in doubling time when grown in the absence of inducer IPTG, and a growth rate identical to that of the wild-type strain when grown with IPTG. The cca mutation in combination with either pnpA, encoding PNPase, an enzyme with exonuclease and poly(A) polymerase activities, or rnr, encoding RNase R, an enzyme that degrades strong stem-loop structures, affects growth more than either mutation alone
additional information
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replacement of residues 100-117 in the human enzyme by the corresponding part of the Escherichia coli enzyme, positions 66-87, leading to the chimera HEH with human enzyme N-terminus, Escherichia coli flexible loop, human enzyme C-terminus. Replacement of the region in the Escherichia coli enzyme by either the human loop element, representing the reciprocal experiment, chimera EHE, or by the Bacillus stearothermophilus part, resulting in chimera EBE. Whereas the wild-type enzymes incorporate the complete CCA sequence, the chimeric enzymes EHE, HEH and EBE show a reduced activity and add only 2 C residues to the tRNA substrate. The chimeras EHE, HEH show a 45-to 145fold reduced kcat for A-incorporation. The corresponding KM values are consistent with the KM values of the loop donor enzymes
additional information
-
replacement of the highly conserved residues glutamic acid, aspartic acid and arginine o f the EDxxR motif aabolishes nucleotide specificity of the enzyme
additional information
exchange of the N- and C-termini (carrying the catalytic core and the tRNA binding region, respectively) of Exiguobacterium sibiricum and Geobacillus stearothermophilus enzymes. The chimera show a reaction temperature optimum comparable to that of the parental cold-adapted enzyme, and both show a single-step denaturation curve with melting temperatures of 55 to 57°C
additional information
-
exchange of the N- and C-termini (carrying the catalytic core and the tRNA binding region, respectively) of Exiguobacterium sibiricum and Geobacillus stearothermophilus enzymes. The chimera show a reaction temperature optimum comparable to that of the parental cold-adapted enzyme, and both show a single-step denaturation curve with melting temperatures of 55 to 57°C
-
additional information
-
replacement of residues 66-87 in the Escherichia coli enzyme by the Bacillus stearothermophilus loop element, resulting in chimera EBE. Whereas the wild-type enzymes incorporate the complete CCA sequence, the chimeric enzyme EBE shows a reduced activity and adds only 2 C residues to the tRNA substrate. The chimera EBE shows a reduced kcat for A-incorporation. The corresponding KM value is consistent with the KM values of the loop donor enzymes
additional information
exchange of the N- and C-termini (carrying the catalytic core and the tRNA binding region, respectively) of Exiguobacterium sibiricum and Geobacillus stearothermophilus enzymes. The chimera show a reaction temperature optimum comparable to that of the parental cold-adapted enzyme, and both show a single-step denaturation curve with melting temperatures of 55 to 57°C
additional information
replacement of residues 100117 in the human enzyme by the corresponding part of the Escherichia coli enzyme, positions 6687, leading to the chimera HEH with human enzyme N-terminus, Escherichia coli flexible loop, human enzyme C-terminus. Replacement of the region in the Escherichia coli enzyme by the human loop element, representing the reciprocal experiment, chimera EHE. Whereas the wild-type enzymes incorporate the complete CCA sequence, the chimeric enzymes EHE, HEH show a reduced activity and add only 2 C residues to the tRNA substrate. The chimeras EHE, HEH show a 45- to 145fold reduced kcat for A-incorporation. The corresponding KM values are consistent with the KM values of the loop donor enzymes
additional information
-
replacement of the highly conserved residues glutamic acid, aspartic acid and arginine o f the EDxxR motif aabolishes nucleotide specificity of the enzyme
additional information
mutations near the active site can differentially affect addition of C74, C75, or A76
additional information
-
mutations near the active site can differentially affect addition of C74, C75, or A76
additional information
Saccharomyces cerevisiae tRNAHis transcripts with and without G-1 are generated, carrying a C73 discriminator instead of the wild-type A73 position (tRNAHisDELTAG-1 A73C and tRNAHis+G-1 A73C). Due to the additional base pair G-1/C73, tRNAHis+G-1 A73C carries an extended acceptor stem with a base-paired discriminator position. This situation does not affect CCA-addition catalyzed by the CCA-adding enzyme and results in a similarly efficient CCA incorporation to tRNAHis+G-1 A73C compared to tRNAHisDELTAG-1 A73C. Both tRNAHis substrates with a cytosine at the discriminator position are readily accepted as substrates for CCA-addition, showing comparable band patterns like the wild-type tRNAHis containing an A73. Analysis of G-1 incorporation on tRNAHis A73C variants with and without 3'-CCA-end shows significant preference of Thg1 for tRNAHis containing the 3'-CCA, both in terms of rate and maximal amount of product formed in the reactions, kinetic analysis
additional information
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Saccharomyces cerevisiae tRNAHis transcripts with and without G-1 are generated, carrying a C73 discriminator instead of the wild-type A73 position (tRNAHisDELTAG-1 A73C and tRNAHis+G-1 A73C). Due to the additional base pair G-1/C73, tRNAHis+G-1 A73C carries an extended acceptor stem with a base-paired discriminator position. This situation does not affect CCA-addition catalyzed by the CCA-adding enzyme and results in a similarly efficient CCA incorporation to tRNAHis+G-1 A73C compared to tRNAHisDELTAG-1 A73C. Both tRNAHis substrates with a cytosine at the discriminator position are readily accepted as substrates for CCA-addition, showing comparable band patterns like the wild-type tRNAHis containing an A73. Analysis of G-1 incorporation on tRNAHis A73C variants with and without 3'-CCA-end shows significant preference of Thg1 for tRNAHis containing the 3'-CCA, both in terms of rate and maximal amount of product formed in the reactions, kinetic analysis
-
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Schofield, P.; Williams, K.R.
Purification and some properties of Escherichia coli tRNA nucleotidyltransferase
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Escherichia coli, Escherichia coli B / ATCC 11303
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CCA addition by tRNA nucleotidyltransferase: polymerization without translocation?
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Escherichia coli, Saccharolobus shibatae
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Crystal structure of the human CCA-adding enzyme: insights into template-independent polymerization
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Homo sapiens (Q96Q11), Homo sapiens
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Escherichia coli (P06961), Escherichia coli
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Saccharolobus shibatae (P77978), Saccharolobus shibatae
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Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template
Nature
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Archaeoglobus fulgidus (O28126), Archaeoglobus fulgidus
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A model for C74 addition by CCA-adding enzymes: C74 addition, like C75 and A76 addition, does not involve tRNA translocation
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Archaeoglobus fulgidus
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Geobacter sulfurreducens contains separate C- and A-adding tRNA nucleotidyltransferases and a poly(A) polymerase
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Geobacter sulfurreducens, Alkalihalobacillus clausii (Q5WGA1), Thermus thermophilus (Q72K91)
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Characterization of tRNA(Cys) processing in a conditional Bacillus subtilis CCase mutant reveals the participation of RNase R in its quality control
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Bacillus subtilis
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Unusual evolution of a catalytic core element in CCA-adding enzymes
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Geobacillus stearothermophilus, Escherichia coli, Homo sapiens (Q96Q11)
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How the CCA-adding enzyme selects adenine over cytosine at position 76 of tRNA
Science
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Archaeoglobus fulgidus (O28126)
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Sulfolobus shibatae CCA-adding enzyme forms a tetramer upon binding two tRNA molecules: A scrunching-shuttling model of CCA specificity
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Saccharolobus shibatae (P77978), Saccharolobus shibatae
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Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme
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Saccharolobus shibatae (P77978), Saccharolobus shibatae
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The CCA-adding enzyme has a single active site
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On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes
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Archaeoglobus fulgidus (O28126), Archaeoglobus fulgidus
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The folding capacity of the mature domain of the dual-targeted plant tRNA nucleotidyltransferase influences organelle selection
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453
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Arabidopsis thaliana
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The ability of an arginine to tryptophan substitution in Saccharomyces cerevisiae tRNA nucleotidyltransferase to alleviate a temperature-sensitive phenotype suggests a role for motif C in active site organization
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2097-2106
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no activity in Saccharomyces cerevisiae
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Franz, P.; Betat, H.; Moerl, M.
Genotyping bacterial and fungal pathogens using sequence variation in the gene for the CCA-adding enzyme
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47
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Aspergillus sp., Vibrio sp.
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On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme
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Archaeoglobus fulgidus (O28126)
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Sasarman, F.; Thiffault, I.; Weraarpachai, W.; Salomon, S.; Maftei, C.; Gauthier, J.; Ellazam, B.; Webb, N.; Antonicka, H.; Janer, A.; Brunel-Guitton, C.; Elpeleg, O.; Mitchell, G.; Shoubridge, E.A.
The 3 addition of CCA to mitochondrial tRNASer(AGY) is specifically impaired in patients with mutations in the tRNA nucleotidyl transferase TRNT1
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24
2841-2847
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Homo sapiens (Q96Q11), Homo sapiens
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Liwak-Muir, U.; Mamady, H.; Naas, T.; Wylie, Q.; McBride, S.; Lines, M.; Michaud, J.; Baird, S.D.; Chakraborty, P.K.; Holcik, M.
Impaired activity of CCA-adding enzyme TRNT1 impacts OXPHOS complexes and cellular respiration in SIFD patient-derived fibroblasts
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79
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Homo sapiens (Q96Q11)
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Ernst, F.G.; Rickert, C.; Bluschke, A.; Betat, H.; Steinhoff, H.J.; Moerl, M.
Domain movements during CCA-addition: a new function for motif C in the catalytic core of the human tRNA nucleotidyltransferases
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Homo sapiens (Q96Q11)
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Yamashita, S.; Takeshita, D.; Tomita, K.
Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase
Structure
22
315-325
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Aquifex aeolicus (O67911), Aquifex aeolicus
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Yamashita, S.; Tomita, K.
Mechanism of 3-matured tRNA discrimination from 3-immature tRNA by class-II CCA-adding enzyme
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24
918-925
2016
Thermotoga maritima (Q9WZH4), Thermotoga maritima, Thermotoga maritima DSM 3109 (Q9WZH4)
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Poehler, M.T.; Roach, T.M.; Betat, H.; Jackman, J.E.; Moerl, M.
A temporal order in 5'-and 3'-processing of eukaryotic tRNAHis
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20
1384
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Saccharomyces cerevisiae (P21269), Saccharomyces cerevisiae ATCC 204508 (P21269)
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Dictyostelium discoideum (Q54BQ2), Dictyostelium discoideum (Q55BE1)
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Adaptation of the Romanomermis culicivorax CCA-adding enzyme to miniaturized armless tRNA substrates
Int. j. Mol. Sci.
21
9047
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Romanomermis culicivorax, Homo sapiens (Q96Q11), Homo sapiens
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Shikha, S.; Schneider, A.
The single CCA-adding enzyme of T. brucei has distinct functions in the cytosol and in mitochondria
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Trypanosoma brucei brucei, Trypanosoma brucei brucei 927/4 GUTat10.1
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Czech, A.
Deep sequencing of tRNAs 3-termini sheds light on CCA-tail integrity and maturation
RNA
26
199-208
2020
Escherichia coli, Escherichia coli CA244
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Ernst, F.G.M.; Erber, L.; Sammler, J.; Juehling, F.; Betat, H.; Moerl, M.
Cold adaptation of tRNA nucleotidyltransferases A tradeoff in activity, stability and fidelity
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Planococcus halocryophilus (A0A1C7DQ98), Exiguobacterium sibiricum (B1YHR1), Bacillus subtilis (P42977), Geobacillus stearothermophilus (Q7SIB1), Bacillus subtilis 168 (P42977), Exiguobacterium sibiricum DSM 17290 (B1YHR1)
brenda
Pawar, K.; Shigematsu, M.; Loher, P.; Honda, S.; Rigoutsos, I.; Kirino, Y.
Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme
RNA Biol.
16
1817-1825
2019
Homo sapiens
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